Program blastn blastp blastx tblastn tblastx Database Apis_mellifera Bos_taurus Canis_familiaris Danio_rerio Equus_caballus Gallus_gallus Gallus_gallus_wustl_contigs Gallus_gallus_wustl_supercontigs Homo_sapiens Macaca_mullata Monodelphis_domestica Mus_musculus Nasonia_vitripennis Ornithorhynchus_anatinus Pan_troglodytes Rattus_norvegicus Saccharomyces_cerevisiae Sus_scrofa Tribolium_castaneum Unigene_all_organism bacteria ecoli536 ecoliK12_DH10B ensembl_bos_taurus ensembl_bos_taurus_ncrna ensembl_canis_familiaris ensembl_ciona_intestinalis ensembl_danio_rerio ensembl_equus_caballus ensembl_equus_caballus_ncrna ensembl_gallus_gallus ensembl_gallus_gallus_ncrna ensembl_homo_sapiens ensembl_homo_sapiens_ncrna ensembl_macaca_mulatta ensembl_monodelphis_domestica ensembl_mus_musculus ensembl_oryctolagus_cuniculus ensembl_oryctolagus_cuniculus_ncrna ensembl_oryzias_latipes ensembl_pan_troglodytes ensembl_pongo_pygmaeus ensembl_rattus_norvegicus ensembl_takifugu_rubripes ensembl_tetraodon_nigroviridis ensembl_xenopus_tropicalis env_nr env_nt est_human est_mouse est_others frnadb fungi genbank_phage gss htgs human_genomic human_genomic_transcript igSeqNt igSeqProt mouse_genomic_transcript nr nt other_genomic pataa patnt pdbaa pdbnt refseq_genomic refseq_protein refseq_rna rfam sts swissprot uniprot_sprot uniprot_sprot_varsplic uniprot_trembl uniref100 uniref50 uniref90 vector wgs
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
